Increasing the reliability of protein interactomes.
نویسندگان
چکیده
Protein interactions are crucial components of all cellular processes. An in-depth knowledge of the full complement of protein interactions in a cell, therefore, provides insight into the structure, properties and functions of the cell and its components. An accurate and comprehensive protein interaction network is, thus, an invaluable framework to study protein regulation in disease. Although the amount of protein-protein interaction data has grown significantly because of advances in high-throughput experimental techniques, these high-throughput methods are highly susceptible to noise. Therefore, computational techniques for assessing the reliability of a protein-protein interaction are highly desirable. We review here computational techniques for assessing and improving the reliability of protein-protein interaction data from these high-throughput experiments.
منابع مشابه
Mining protein interactomes to improve their reliability and support the advancement of network medicine
High-throughput detection of protein interactions has had a major impact in our understanding of the intricate molecular machinery underlying the living cell, and has permitted the construction of very large protein interactomes. The protein networks that are currently available are incomplete and a significant percentage of their interactions are false positives. Fortunately, the structural pr...
متن کاملIncreasing Con dence of Protein-Protein Interactomes
High-throughput experimental methods, such as yeast-two-hybrid and phage display, have fairly high levels of false positives (and false negatives). Thus the list of protein-protein interactions detected by such experiments would need additional wet laboratory validation. It would be useful if the list could be prioritized in some way. Advances in computational techniques for assessing the relia...
متن کاملIncreasing confidence of protein-protein interactomes.
High-throughput experimental methods, such as yeast-two-hybrid and phage display, have fairly high levels of false positives (and false negatives). Thus the list of protein-protein interactions detected by such experiments would need additional wet laboratory validation. It would be useful if the list could be prioritized in some way. Advances in computational techniques for assessing the relia...
متن کاملIncreasing confidence of protein interactomes using network topological metrics Supplementary Materials APPENDIX A ALTERNATIVE PATHS IN PROTEIN-PROTEIN INTERACTIONS
First, we analyzed protein-protein interaction (PPI) datasets from three different species (Saccharomyces cerevisiae, Drosophila melanogaster, and Caenorhabditis elegans) to investigate the extent to which alternative paths are present in PPI datasets. We focus here only on interactomes that are derived by the popular high-throughput assays such as Y2H. Then, we provide some actual examples in ...
متن کاملIncreasing confidence of protein interactomes using network topological metrics
MOTIVATION Experimental limitations in high-throughput protein-protein interaction detection methods have resulted in low quality interaction datasets that contained sizable fractions of false positives and false negatives. Small-scale, focused experiments are then needed to complement the high-throughput methods to extract true protein interactions. However, the naturally vast interactomes wou...
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ورودعنوان ژورنال:
- Drug discovery today
دوره 13 15-16 شماره
صفحات -
تاریخ انتشار 2008